Yeah I think Patrick was in an impossible position in the 2001-2004 era, but he also did a pretty horrendous job at managing the Penguins assets over that window.
Like look at these trades:
-Jagr for Beech, Lupaschuk and Sivek
-Kasparaitis for Berry and Nieminen
-Ference for a 3rd
-Kovalev for Fata, Lintner, Samuelsson and Bouchard
-Hrdina for Abid, Focht and Lefebvre
-Straka for Anshakov and Strbak
-Berehowsky for Jackman (honestly, I never realized Berehowsky played for the Penguins)
Pretty much all of these trades were the Penguins giving up a legitimate NHLer for nothing. Ference for a 3rd was especially egregious, Ference was a 23 year old defensemen on a team with an awful defense and they ditched him for a 3rd rounder that didn't pan out.
Samuelsson in the Kovalev deal is the only player in these trades that actually was an effective player in the NHL, but he was then moved in the deal to trade up for the Fleury pick.