Quite a few of those players are going to be UFAs: Schaller, Donovan, D'Amigo, Schneider, O'Dell, Ruhwedel and Sdao. I think they try to re-sign Schaller, but aside from that I'm not sure. Lean towards yes on Schneider and O'Dell too.
As for RFAs, as said above Jacobs is a lock to not be qualified and I agree that Nevins is likely too. Guptill may or may not be qualified, I'm not sure. Makarov might be qualified, but he's expected to sign in Russia so he wouldn't make any difference towards the contract limit.
Catenacci, Nelson and Kasdorf are the only RFAs I see as locks to be qualified (aside from the guys who've been in the NHL all year like Deslauriers, Foligno, Girgensons, Larsson, McCabe and Ristolainen)